Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes | journal | April 2018 |
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton | journal | June 2015 |
Evaluation of four primer sets for analysis of comammox communities in black soils | journal | July 2022 |
Diversity, ecology and evolution of Archaea | journal | May 2020 |
Examining the global distribution of dominant archaeal populations in soil | journal | November 2010 |
Soil bacterial diversity mediated by microscale aqueous-phase processes across biomes | journal | January 2020 |
A Salicylate–Hypochlorite Method for Determining Ammonia in Seawater | journal | May 1980 |
The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies | journal | March 2015 |
The global soil community and its influence on biogeochemistry | journal | August 2019 |
Estimating prokaryotic diversity and its limits | journal | July 2002 |
VEGAN, a package of R functions for community ecology | journal | April 2003 |
Direct evidence for the role of microbial community composition in the formation of soil organic matter composition and persistence | journal | November 2021 |
Metagenomics uncovers gaps in amplicon-based detection of microbial diversity | journal | February 2016 |
Comparison of Two 16S rRNA Primers (V3–V4 and V4–V5) for Studies of Arctic Microbial Communities | journal | February 2021 |
Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs | journal | August 2016 |
16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform | journal | June 2016 |
Temperature and soil moisture control microbial community composition in an arctic–alpine ecosystem along elevational and micro-topographic gradients | journal | April 2019 |
A fast and direct spectrophotometric method for the sequential determination of nitrate and nitrite at low concentrations in small volumes | journal | May 2014 |
Niche specialization of terrestrial archaeal ammonia oxidizers | journal | December 2011 |
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota | journal | July 2015 |
Archaea rather than bacteria control nitrification in two agricultural acidic soils: Archaeal nitrification in acidic soils | journal | October 2010 |
Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment | journal | October 2013 |
The consequences of niche and physiological differentiation of archaeal and bacterial ammonia oxidisers for nitrous oxide emissions | journal | January 2018 |
Ammonia-oxidizing archaea are integral to nitrogen cycling in a highly fertile agricultural soil | journal | June 2021 |
A new view of the tree of life | journal | April 2016 |
A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon | journal | April 2014 |
Influence of 16S rRNA Hypervariable Region on Estimates of Bacterial Diversity and Community Composition in Seawater and Marine Sediment | journal | July 2019 |
Micromanaging the nitrogen cycle in agroecosystems | journal | November 2022 |
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data | journal | October 2012 |
Biogeographic Distribution Patterns of the Archaeal Communities Across the Black Soil Zone of Northeast China | journal | January 2019 |
Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes | journal | September 2018 |
ARB: a software environment for sequence data | journal | February 2004 |
Ecology and exploration of the rare biosphere | journal | March 2015 |
Ecophysiology of an Ammonia-Oxidizing Archaeon Adapted to Low-Salinity Habitats | journal | May 2012 |
Archaea in Biogeochemical Cycles | journal | September 2013 |
Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota | journal | July 2015 |
Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples: Primers for marine microbiome studies | journal | October 2015 |
Exploring the Archaeome: Detection of Archaeal Signatures in the Human Body | journal | December 2019 |
The vast unknown microbial biosphere | journal | June 2016 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools | journal | November 2012 |
Removing Noise From Pyrosequenced Amplicons | journal | January 2011 |
The Uncultured Microbial Majority | journal | October 2003 |
Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution | journal | April 2019 |
Classifying human influences on terrestrial ecosystems | journal | March 2021 |
The role of multiple global change factors in driving soil functions and microbial biodiversity | journal | November 2019 |
Soil bacterial and fungal communities across a pH gradient in an arable soil | journal | May 2010 |
Gene duplication drives genome expansion in a major lineage of Thaumarchaeota | journal | October 2020 |
Effects of agricultural land use on the differentiation of nitrifier communities and functional patterns from natural terrestrial ecosystems | journal | August 2022 |
Salt tolerance-based niche differentiation of soil ammonia oxidizers | journal | August 2021 |
Ammonia-oxidizing bacteria are sensitive and not resilient to organic amendment and nitrapyrin disturbances, but ammonia-oxidizing archaea are resistant | journal | February 2021 |
Mitigating N2O emission by synthetic inhibitors mixed with urea and cattle manure application via inhibiting ammonia-oxidizing bacteria, but not archaea, in a calcareous soil | journal | March 2021 |
Di-(2-ethylhexyl) phthalate (DEHP) exposure suppressed the community diversity and abundance of ammonia-oxidizers and mitigated N2O emissions in an alkaline soil | journal | December 2021 |
Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys | journal | March 2017 |
Differential response of nonadapted ammonia-oxidising archaea and bacteria to drying-rewetting stress | journal | September 2014 |
A communal catalogue reveals Earth’s multiscale microbial diversity | journal | November 2017 |
Time series assessment of Thaumarchaeota ecotypes in Monterey Bay reveals the importance of water column position in predicting distribution–environment relationships | journal | March 2020 |
Bacterial functional prediction tools detect but underestimate metabolic diversity compared to shotgun metagenomics in southwest Florida soils | journal | December 2021 |
Microbial diversity and function in soil: from genes to ecosystems | journal | June 2002 |
Primer and platform effects on 16S rRNA tag sequencing | journal | August 2015 |
Soil pH mediates the balance between stochastic and deterministic assembly of bacteria | journal | March 2018 |
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms | journal | January 2011 |
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys | journal | December 2015 |
Linking 16S rRNA Gene Classification to amoA Gene Taxonomy Reveals Environmental Distribution of Ammonia-Oxidizing Archaeal Clades in Peatland Soils | journal | August 2021 |
Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons | journal | August 2019 |
Differential contributions of ammonia oxidizers and nitrite oxidizers to nitrification in four paddy soils | journal | October 2014 |
Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton: Primer choice effects on populations, communities | journal | April 2018 |
ggplot2 | book | January 2016 |
Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis | journal | March 2016 |
The Evolution Pathway of Ammonia-Oxidizing Archaea Shaped by Major Geological Events | journal | May 2021 |
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences | journal | August 2014 |
Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils | journal | December 2011 |
Autotrophic ammonia oxidation by soil thaumarchaea | journal | September 2010 |
Differential Ecosystem Function Stability of Ammonia-Oxidizing Archaea and Bacteria following Short-Term Environmental Perturbation | journal | June 2020 |
Phylogenetically Distinct Phylotypes Modulate Nitrification in a Paddy Soil | journal | May 2015 |
Long-Term Adaptation of Acidophilic Archaeal Ammonia Oxidisers Following Different Soil Fertilisation Histories | journal | May 2021 |
Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality | journal | June 2020 |